Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015953450.1_cds_XP_016492593.1_82786
CDS Infomation

[gene=LOC107812071] [db_xref=GeneID:107812071] [protein=HIPL1 protein-like] [protein_id=XP_016492593.1] [location=complement(join(17407..17800,17888..18111,18218..18396,18509..18725,19107..19880,20228..20385,20492..20588))] [gbkey=CDS]
Sequence

ATGAATAACCACTTCAATCTGCTGTTCTCATTCATTTATCTCCTTCTGTATAGCTTCATC
AACCCATCTTCTTCACTCCCTTTATGCACAGACTTGAGAGCACCTGTAACTCCAAAGAAG
CCTTTGGCTTTTTGTCCATATAATGGAAGAGTCTGCTGTGACTCTTCTAAAGATCTGCAA
TTGCAGAAGCTTTTTGAGGGTATGAATATAACTGACACTGCATGTAGTTCTGCTGTGAAG
TCAATACTCTGCTCAACATGTGATCAGTTCTCAGCAGAGTTGTTTAAGGTGAAGTCAGGG
CCAAGACCCGTTCCTATTCTTTGCAATTCAACTGCTACATCAGAGAAAAGCTTTTGTTCA
TCTGTTTGGGATACTTGCCAAAACATACCAATAACAAATTCTCCTTTTGCACCATCCTTG
AAAACCAAAGCAGGAGAGAGCCAAAACTCAAACTCCTCCTTGTTAACAGACTTATGGCAA
TCGAAATCCGATTTCTGTGAAGCATTTGGTGGAAACTTTGATAAAGATTCATTATGTTTC
AGTGGAGAACAGGTTTTACTCAAGAAAAATGAAACATTACAACCTCCCAATGGCATGTGT
TTAGAGAAGATTGCTGATGGAGCTTACATCAATATGGTTCCTCATCCTGATGGATCGAAC
AGCGTATTTTTCTCCAATCAGCCTGGAAAAATTTGGTTAGCAACTATACCAGAACAAGAC
TCAGGAGAAGCAATGGAACTTGATGAATCAAGTCCATTTGCTGATTTAACAGATGAGGTT
TACTTAGATGCAAGATTTGGGATGATGGGAATGGCTTTTCATCCAAACTTTGCCAAGAAT
GGCAGGTTTTTTGCATCATTTAACTGTGACAAAGCTAAGTCTCCTAGATGTGCTGGAAGA
TGTGCTTGTAATTCAGATGTTGGTTGTGACCCTTCAAAGATAAACTCAGATGATAATAAG
CAGCCATGTCAATATCATAATGTTGTTGCAGAGTTCAGTGTTAATGGGACTGCACCAAAT
CCATCCAAGGCGGAGAAGGCAAAACCATCAGAAGTGAGAAGAATATTTACAATGGGGCTC
CCATTTACAGCTAATCATGGAGGACAAATACTCTTTGGCCCTGAAGATGGATATCTTTAC
ATTATGATGGGAGATGGTGGAAGCAAGGGTGATTCTTACAATTTTGCTCAAAATAAGAAG
TCCTTGCTAGGAAAAATTATGAGGGTTGATATCGATAACATACCAAGTCAAGAAGAAATA
TCAGACCTTGGACATTGGGGTAACTATTCAGTTCCTCGAGATAATCCTTATTCACAAGAC
AAGGATTTGCAGCCTGAAATTTGGGCTCTAGGATTGAGAGATCCTTGGCGCTGTAGCTTC
GATTCAGAAAGGCCTTCTTACTTCATCTGTGCGGATGTTGGCCAGGATCAATATGAAGAA
GTTGACATCATCACAAGAGGGGGAAACTATGGATGGAGCATGTACGAAGGTCCTTTCCGC
TTTAAAAATGCTTCAGCTGATGATTCTATGGATCCCATCTTCCCAGTATTAGGATACAAC
CATTCTGATATAAATAAAGAGGTTGGATCTGCAGCTATCTCAGGTGGCTATGTTTATCGC
TCCAAGACTGATCCCTGCATATATGGAAGTTACCTATATGGAGATTTGTATGCTAAGAAT
TTCTGGGCAGCCCAAGAAAATCCATACAATAGTGGGAACTTCACAACAAGAGGCATACCA
TTTAGTTGTGCTCATGATTCCCCTCTCAACTGCAGCTCAGTACCCAATAGTCCATTGCCT
GCTTTAGGTTACATATTCTCATTTGGACAGGATAACAGAAAGGATACCTATGTTTTAACA
AGCACCGGCGTATACAGAGTGGTTCGTCCAAGTCGCTGCAACTACACTTGCTCGAAGGAG
ACAGTGAGGGCTGCTGAGAGGCCAGGTCCCTCTGCACCTTCAGATGGTCACATTGCTAAA
CCAGATTTCTGCTTGGTCCTTGTTCTTTACTGCCTGCTGCATTTGACTAGCTTTATCTTG
TAG

Peptide Sequence

PEP ID

XP_016492593.1
PEP Infomation

PREDICTED: HIPL1 protein-like [Nicotiana tabacum]
Sequence

MNNHFNLLFSFIYLLLYSFINPSSSLPLCTDLRAPVTPKKPLAFCPYNGRVCCDSSKDLQ
LQKLFEGMNITDTACSSAVKSILCSTCDQFSAELFKVKSGPRPVPILCNSTATSEKSFCS
SVWDTCQNIPITNSPFAPSLKTKAGESQNSNSSLLTDLWQSKSDFCEAFGGNFDKDSLCF
SGEQVLLKKNETLQPPNGMCLEKIADGAYINMVPHPDGSNSVFFSNQPGKIWLATIPEQD
SGEAMELDESSPFADLTDEVYLDARFGMMGMAFHPNFAKNGRFFASFNCDKAKSPRCAGR
CACNSDVGCDPSKINSDDNKQPCQYHNVVAEFSVNGTAPNPSKAEKAKPSEVRRIFTMGL
PFTANHGGQILFGPEDGYLYIMMGDGGSKGDSYNFAQNKKSLLGKIMRVDIDNIPSQEEI
SDLGHWGNYSVPRDNPYSQDKDLQPEIWALGLRDPWRCSFDSERPSYFICADVGQDQYEE
VDIITRGGNYGWSMYEGPFRFKNASADDSMDPIFPVLGYNHSDINKEVGSAAISGGYVYR
SKTDPCIYGSYLYGDLYAKNFWAAQENPYNSGNFTTRGIPFSCAHDSPLNCSSVPNSPLP
ALGYIFSFGQDNRKDTYVLTSTGVYRVVRPSRCNYTCSKETVRAAERPGPSAPSDGHIAK
PDFCLVLVLYCLLHLTSFIL

Transcript Sequence

Gene sequence data has not been registered.